rs32004428 SNP Detail

Summary

• ID
  rs32004428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43509952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGAGCA GGCGGGCAGG
  CGTGAGTTAT TAAAGTGAAC GCAAAGGCAG TACAAGTATA ACATACATGA TGGTCTTCTT
  CAGGAAACCA CGGCGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGCGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGT GTAAATAGTG ATGAGTGAAA
  Y
  GATGGACCTA GATCTTGAGG GCCAGGCAGC CTGGGAAACT TTCTCCCCTT CAGTTTGCCA
  TTGCTAATTC ATTTGCAAAG CAAGAGTAAT AGAACTTGAA TAAGATTGTA TATTCCCCAG
  CATCCTTAGA GGTGAGGAAC GGGGAAAGAC TATGGGAACC CCATCCCATG CCCAGGCTTC
  CAGCTGTAGT CCTAGAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J
ss45595633	mCV24974089	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss146240462	ENSMUSSNP4059715	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J
rs32004428					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43509952 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car9	carbonic anhydrase 9			Intron
				Noncoding-Transcript-Variant
Cpgi14193	CpG island 14193			1078 bp distal
Gm12454	predicted gene 12454			1168 bp upstream
Rr591016	regulatory region 591016			678 bp distal
Rr591017	regulatory region 591017			1083 bp proximal
Tssr36975	transcription start site region 36975			1053 bp downstream
Tssr41426	transcription start site region 41426			1218 bp upstream
Tssr41427	transcription start site region 41427			1199 bp upstream