rs31996288 SNP Detail

Summary

• ID
  rs31996288
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149931476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG AGAACACCCA GGGGTGTGGT
  W
  AAGCCAGCTG AGCCGCAACC TGGGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45595127	mCV25152777	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T	T
ss148041570	ENSMUSSNP622140	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		T
ss321426968	CHEV_4_149221128	CHEVERUD	SCREENING_POP	f	SNP						T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31996288					SNP	T	T	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149931476 () rs orientation: forward

Symbol	Name	Function Class
Gm54270	predicted gene, 54270	within coordinates
Rr605078	regulatory region 605078	1552 bp distal
Rr605079	regulatory region 605079	within coordinates