rs31989328 SNP Detail

Summary

• ID
  rs31989328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106717158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGCA ACATCAGCTG CATTCCTTGG
  R
  CTCTGTCCCC AAGCTCTCCC TGATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45593871	mCV23880915	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147172890	ENSMUSSNP909439	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss321247424	CHEV_4_106532566	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31989328					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106717158 () rs orientation: forward

Symbol	Name	Function Class
Gm12746	predicted gene 12746	1443 bp upstream
Gm69305	predicted gene, 69305	1522 bp upstream
Gm69780	predicted gene, 69780	349 bp upstream
Gm70282	predicted gene, 70282	within coordinates
Rr376973	regulatory region 376973	within coordinates
Rr596849	regulatory region 596849	110 bp distal
Rr596850	regulatory region 596850	within coordinates
Tssr38192	transcription start site region 38192	206 bp downstream
Tssr42651	transcription start site region 42651	572 bp upstream
Tssr42652	transcription start site region 42652	365 bp upstream
Tssr42653	transcription start site region 42653	341 bp upstream