rs31988466 SNP Detail

Summary

• ID
  rs31988466
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150692449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGTCCT TGTTTAAGCA
  GGTAAAATCT GCAGGCGGTT TTTACAAAGT AGCCTTGACT GCCTGTGTTC CCACCAGCAA
  CTTATAGTTG TGTAGGCCTT CTGCATTTTA AATTTATATT CTTTAATTTC CTCAGCCAGG
  GTTTCCACCT GGACTAGGTG GCTGGTCATC GTGACCCATG GTGCCCAGGT TTATTAATCT
  K
  CTCTGGGCGC TTTATTCTTC CATTACCGCT GTTGTAACTT GTTGAGGAAG CTTGCTGTGG
  CCTGCACTAT TACACTTACC TTGAGGTCTC AGCTGTTAAA AGACAACAAG TTCAGGAGTC
  AGGTGGAGTG GATCAGCCTG GCTTCTGGAA CCTTTTTACT ATTTGCTGTC TAGCAATGGG
  CTGGTTTCTT ACTGTCACTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45593767	mCV23452783	ABI	CRAMUS_MOUSE	f	SNP		T	G					G		G
ss46716815	NES11011438	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss148055287	ENSMUSSNP4264043	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31988466					SNP	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716815	NES11011438	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150692449 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				Noncoding-Transcript-Variant
Rr605351	regulatory region 605351			647 bp distal