rs31986589 SNP Detail

Summary

• ID
  rs31986589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119594382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAAAGAG CATCATACAT
  AGATCTACAT CAAAGGAGAC AGGACTATGG GTTGGGAACC TAGCTTAGTG ATAGAATGCT
  TACCTGGCAT GCATGAGGTG CTAAGCTCTA TTTCCAGTGC CACAGAAGAG TGATAGAGAT
  ATACAGAGTA ATCTATATCT TATCACTTCT AACATACACA TATGACTATA TCCAGTGATA
  Y
  GGAATGGGAA ATTTTGATTT GTGTTCTTAA AAGCTAATCT GTTATCAGTT TATAAAAAAG
  GGGGGAGGGG AGGGATTAAA GGAGAGGTGC TAAGCCAGGG AGACATTAGG AAGCCAAGGC
  TAGAATCCAG AATGAGGTGA TCCAGGCTAA GACAGGTGGT GACATAGGAT GGATCCTGGA
  AGAAATAGAC CCCAGATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45593647	mCV24641872	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss147334934	ENSMUSSNP3520924	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31986589					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119594382 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598641	regulatory region 598641			1309 bp proximal