rs31984208 SNP Detail

Summary

• ID
  rs31984208
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139340236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG TCAGGAGTGT GCCTGCATTT
  R
  CCCTACTCAA CATGGGGCAG GACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
ss45594209	mCV22729052	ABI	CRAMUS_MOUSE	f	SNP		A	A		G
ss63333936	NES17505844	PERLEGEN	MM_PANEL2	f	SNP	A		A	A		G		A	A
ss147675964	ENSMUSSNP169239	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
ss321382808	CHEV_4_139168840	CHEVERUD	SCREENING_POP	f	SNP							G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
rs31984208					SNP	A	A	A	A	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63333936	NES17505844	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139340236 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15172	CpG island 15172	1907 bp proximal
Gm21969	predicted gene 21969	Intron
Iffo2	intermediate filament family orphan 2	Intron
Rr377285	regulatory region 377285	1672 bp downstream
Rr603258	regulatory region 603258	808 bp distal
Rr603259	regulatory region 603259	1022 bp distal
Rr603260	regulatory region 603260	1660 bp proximal