rs31984123 SNP Detail

Summary

• ID
  rs31984123
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129939829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA TCCTTGGGAT GGAGGGTCTT
  W
  AGTCGCTTCC TTTCTAACCC CAACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45593548	mCV22593385	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss147458112	ENSMUSSNP3725487	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321316715	CHEV_4_129723280	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs31984123					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129939829 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	1809 bp upstream
Cpgi14918	CpG island 14918	39 bp distal
Cpgi14919	CpG island 14919	1287 bp proximal
Gm12963	predicted gene 12963	within coordinates
Rr600418	regulatory region 600418	1453 bp distal
Rr600419	regulatory region 600419	within coordinates
Rr600420	regulatory region 600420	375 bp distal
Rr600421	regulatory region 600421	957 bp proximal
Rr600422	regulatory region 600422	1713 bp proximal
Rr600423	regulatory region 600423	1815 bp proximal
Tssr1308	transcription start site region 1308	1510 bp upstream
Tssr39217	transcription start site region 39217	1324 bp upstream
Tssr39218	transcription start site region 39218	1820 bp upstream
Tssr39219	transcription start site region 39219	1878 bp upstream