rs31982910 SNP Detail

Summary

• ID
  rs31982910
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150063421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATG GGTCCCCTGG AAAGGAACAG
  S
  CCCCACAGGG TGCTGGCATG GCTTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45593608	mCV24959948	ABI	CRAMUS_MOUSE	f	SNP	G	G	C					G		G
ss46710234	NES11013424	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	G	C		G	G	G	G		G	C	G	C		G
ss148044549	ENSMUSSNP6118416	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C							G
ss321427474	CHEV_4_149353073	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31982910					SNP	G	G	C	C	C	G	C	G	G	G	G	G	C	G	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46710234	NES11013424	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150063421 () rs orientation: forward

Symbol	Name	Function Class
H6pd	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	511 bp downstream
Rr398875	regulatory region 398875	1043 bp upstream
Rr605129	regulatory region 605129	433 bp distal
Rr605130	regulatory region 605130	within coordinates
Rr605131	regulatory region 605131	709 bp proximal
Tssr44704	transcription start site region 44704	1975 bp downstream