rs31981978 SNP Detail

Summary

• ID
  rs31981978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119691623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGTATG TTACCTAGCA
  CGCAGTCCTA GAAGCAAGGC GCCATGGGAG TGTGAGCCAT CACTGTGCTG CTCTGCGGGG
  TCCTGGTTTC TCCCCCACCA GTGCCTCGGT TCCTGATAAA GCAGGAGGGG GAGAGAATAC
  TATGCATAGA GTAGTTAAGA AGGTTAAATG GCTTCATATC TATACATTGC TTCGGGTAGT
  R
  CCTGGCACTT CAAGACACAT ATACATCCTT TGTTAAAGAC ACAAAGGAGC CTGGAGCCCT
  GGGAGGATAC ATAATTGATG CAAAGGCTGC TGAACTAGGC AGCTCTCAGG TAGAACCTGA
  ACCTAGCATC CTGCTGATGT GTAGCCAGCT TTCCCAAACT TGGCACCTGT GGCATTCTGA
  GCCACACAGC GCCTTCATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45593591	mCV25416447	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss147336485	ENSMUSSNP1951459	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31981978					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119691623 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr377081	regulatory region 377081			within coordinates
Rr598660	regulatory region 598660			186 bp proximal