rs31980835 SNP Detail

Summary

• ID
  rs31980835
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118126556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCACTCGTA ATGGCTGGAT CCGCAGCACT GACCCTGCTC
  CATCGTCAAA CTCAATTACC TGTCACAGGA CAGACGTGGT CACAGCCTGT TAGGGGTGTG
  K
  GGATCTACTA TAGTTTTCCT CACATCCCCA AAAGACCCTT GAGGAACAAG AGAAGAACCA
  CACAGAGAGC AGGCCAACTC TAAAGCCTGC CCAGCCCTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45593044	mCV24291638	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	T
ss147302731	ENSMUSSNP5140141	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31980835					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118126556 () rs orientation: forward

Symbol	Name	Function Class
Ptprf	protein tyrosine phosphatase receptor type F	Intron
Rr598358	regulatory region 598358	223 bp proximal
Rr598359	regulatory region 598359	1441 bp proximal
Rr598360	regulatory region 598360	1545 bp proximal
Tssr43045	transcription start site region 43045	371 bp downstream