rs31980746 SNP Detail

Summary

• ID
  rs31980746
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156443381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACT CAGGACTCCG CCCCTGTGGG
  K
  TGAACTTGCA CTTTGTTCCT TCTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45092909	mCV23342415	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss145800285	ENSMUSSNP1534912	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs31980746					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156443381 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase			Intron
				mRNA-UTR
Rr396424	regulatory region 396424			1067 bp downstream
Rr396425	regulatory region 396425			within coordinates
Rr421201	regulatory region 421201			1171 bp distal
Rr421202	regulatory region 421202			968 bp distal
Rr421203	regulatory region 421203			within coordinates
Rr421204	regulatory region 421204			150 bp distal
Rr421205	regulatory region 421205			1177 bp proximal
Tssr9572	transcription start site region 9572			7 bp upstream
Tssr9573	transcription start site region 9573			66 bp upstream
Tssr9574	transcription start site region 9574			92 bp upstream