rs31979976 SNP Detail

Summary

• ID
  rs31979976
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119818156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATTCTGA GCAAGGCTCC
  TTCTCCTCTT CATTATCCAA CTTCCATTTA TTGATTGGTG GCTTCCACAT GTGTAGCCTG
  ACGCTGGCAG CTAAGACGGA AAACAGCTGC TAACGTGTCT AAGCATTTGC CAGGTGTCTG
  GCAAGGCCAT TCAGGTCTGT TCATTTATTT AATCATCACA AATGATTACA GGGTATACTT
  R
  TGTGGTTTAC AGAAGAGGTG GCAGGCTGGA GGGTTTGGGT TAGACAGTGG GGTCTGGACA
  CTTGTGGAGT GGCAGAGTCA GTCTTCTTCC TAAGAGTCCC CTCTTCACCT GACAGTTGCT
  GCCTTGGCAG ACCAAAGTCA GAGCAGCTCG ACCCTGGCCG TGCCTCAGAC CTTGCAAATA
  GTGCTGTGTT TTGTACTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45592875	mCV24263803	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31979976					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119818156 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68146	predicted gene, 68146			1439 bp upstream
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr398437	regulatory region 398437			1361 bp downstream
Rr598691	regulatory region 598691			1450 bp distal
Rr598692	regulatory region 598692			949 bp distal
Rr598693	regulatory region 598693			1172 bp proximal
Rr598694	regulatory region 598694			1289 bp proximal
Tssr43140	transcription start site region 43140			1574 bp downstream