rs31977209 SNP Detail

Summary

• ID
  rs31977209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:143024673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCATGACGGA AATGGAACCG AAATACAGAA CTGTATATAT ATATATATAT ATATATATAT
  ATATATATAT ATCCTAGCGT AAGAAGTTTC AAAGATAGGA CTGCCAGGAA TACCCCTGAA
  CACCATAAAG AATAGCTTCG TCTCTTTGAA GCAAGTGGAC AACCTCGCCC ATGCACTCTA
  TATAATTTCC CTAACACTAG GTGTTGTCTG TGGAGAATTA TAGAAGCCTA GGCTAGGCCC
  ACCCATCTCA CACAAACCAC TCCTTCACCA GGAAAGACAG TCCTACATCT CTGATGACCA
  Y
  TAGCCTTCAT TTAGTGAGCA ACTGAGACTG TCCCATGACT TCTTGGCTCT GGGATCAAGA
  TTAGAGCTTA GATTCCACCA GGAATATAGA TACAACTTAA AACATCAAAG CAAGAAACAA
  AATAACAGGA GACTGTCCTA GACCCCAGCC ATAGATCACC CAGACAGAAG ACAGTAATTC
  AGAAGAGGAG GACGTGATGG TGGTCCCATC AATCTGTTTC TTTCTAGTCA GGGTCTTAAA
  GCCCAGTCTG GTTTCAAACT CCTTATACCC CAAGATAACC CTGAACCCTC TCATCCTCCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45592849	mCV25366620	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss147779112	ENSMUSSNP3265952	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31977209					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143024673 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	Intron
Rr604188	regulatory region 604188	1602 bp distal
Rr604189	regulatory region 604189	307 bp distal
Rr604190	regulatory region 604190	208 bp proximal
Rr604191	regulatory region 604191	1350 bp proximal
Tssr44447	transcription start site region 44447	1172 bp downstream
Tssr44448	transcription start site region 44448	1362 bp downstream
Tssr44449	transcription start site region 44449	1395 bp downstream