rs31977141 SNP Detail

Summary

• ID
  rs31977141
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100501010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGAATG GCGTCTCACA
  GCCTCACCCA CAGAGGGGAG ATCAGGCTTC TGCTATATGT CGGTTTCTCT GCAGCAGCTA
  CAGGAGTCTA AGGCTGAAGG ATGCATTGTC CTTGGGTAAA GGTCTTTCAG GACAAATTCC
  ATCTTTGATA CTGAGAATAG TCTGGAAAAG GCAGAGGTCA TTTGGCAAAC CTGGAAAGAG
  R
  GTTCCATGGT GTAGTTCCTG GCCTGATGCC AGAGTCCTGG GGCCCAGCAG CCATAGGCTT
  GGAGCCTGTG GGCCCCACGG AGCCCCAGGC ACTTAAGATG ATATTTTAAG TGTTCACTTC
  TCCCGACTCT CAGAGCTCTG CAGCTATTCA AAGTCATGCC GGAGCGCCTG GAGGCTAATG
  GGCTCTGGGG TTCAGCAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46626384	NES10403220	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31977141					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46626384	NES10403220	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100501010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16107	CpG island 16107	1562 bp proximal
Rr615455	regulatory region 615455	within coordinates