rs31977136 SNP Detail

Summary

• ID
  rs31977136
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100499887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGGAGG GAATCCATTA
  AATTTTGAGA AGACAAATTG TCTTTGTTCA GCTCTCTGGG AAGTAGCCCC AGGACTTTTG
  CTTTGATACT GTGATATCGA GAGATTCAAT GCACTGCCTT TCTGCCTCTT AAGACGAGGC
  TCAAAGTGAC ACTTTTATGG GCTCCGGTCA GATGGCAATT TTTCCACAGC TGTTTATGTG
  W
  GGGTTGTTGT CTGTCTGTTT TTTTTTGGGG GGGGGGTTGT CCACGAAACT CATAATCCTA
  GGGACCTCCA GGTAGCAAGT ACATTTGACA TCTCATCTGC TCAGAAAATG GAGACAGCTG
  GGCATGGTAG CAGACACCAT TAATCCTAGC ACTCAGGAGG CAGAGGCGGG CAGATTTCTG
  TGAGTTCAAG GCCAGTCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46626379	NES10403229	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31977136					SNP	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46626379	NES10403229	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100499887 () rs orientation: forward

Symbol	Name	Function Class
Rr615454	regulatory region 615454	1863 bp distal
Rr615455	regulatory region 615455	902 bp proximal