rs31976058 SNP Detail

Summary

• ID
  rs31976058
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148944323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAA ACAGGAGCAA ACTTTGGGGA
  M
  CGCCTTGGCG CTGCATGGAG CCAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45592835	mCV22997488	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss148021663	ENSMUSSNP714963	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss321423428	CHEV_4_148233975	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31976058					SNP	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148944323 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Rr1824	regulatory region 1824	within coordinates
Rr407036	regulatory region 407036	within coordinates
Rr604775	regulatory region 604775	1259 bp distal
Rr604776	regulatory region 604776	within coordinates