rs31972704 SNP Detail

Summary

• ID
  rs31972704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81823300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTA AACCTTTAGT GGGGATGGGA
  Y
  AGCAGAGGAG ACTGGGCATT TTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46089909	mCV25417754	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145171537	ENSMUSSNP3970546	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss322288142	CHEV_7_89318438	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31972704					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81823300 () rs orientation: forward

Symbol	Name	Function Class
Gm45089	predicted gene 45089	within coordinates
Gm73333	predicted gene, 73333	within coordinates
Rr650249	regulatory region 650249	754 bp proximal
Rr650250	regulatory region 650250	1255 bp proximal
Sh3gl3	SH3-domain GRB2-like 3	1281 bp upstream
Tssr67529	transcription start site region 67529	246 bp upstream
Tssr67530	transcription start site region 67530	1246 bp upstream
Tssr67531	transcription start site region 67531	1274 bp upstream
Tssr67532	transcription start site region 67532	1318 bp upstream
Tssr67533	transcription start site region 67533	1635 bp upstream
Tssr67534	transcription start site region 67534	1654 bp upstream
Tssr73370	transcription start site region 73370	1146 bp downstream