rs31971564 SNP Detail

Summary

• ID
  rs31971564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148254108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT GGGCTGGGAA TGAACCTACC
  Y
  ACAGCAGGAA TGCAGCCAGC ATGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss45592501	mCV25354398	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss147994853	ENSMUSSNP3874313	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321417777	CHEV_4_147543760	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs31971564					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148254108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15298	CpG island 15298	25 bp proximal
Gm68449	predicted gene, 68449	within coordinates
Rr604612	regulatory region 604612	914 bp distal
Rr604613	regulatory region 604613	1378 bp distal
Rr604614	regulatory region 604614	1153 bp distal
Rr604615	regulatory region 604615	1064 bp proximal
Rr604616	regulatory region 604616	1310 bp proximal