rs31969915 SNP Detail

Summary

• ID
  rs31969915
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135665207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATTCTA TAGAGGACTT
  GAAATTACTT ATATCAACTT AGAAATCCTG CAAAATCATT AGGAATTATG GAGTCATTAA
  TTCGTCTGTC CAGCATTACT ATGTGAAAGT ACATCTTCAT GTTGGCCTGC AGAAAGTCTG
  CCCAAATAGG GTGGGATAAT GCCCAGGAGT CCTTAGGCTG TGTAATAGTG ACAGGAAAGC
  S
  TATCAGCAGA GAGACCCAAT CCCGGGATGA AGTCTCTAAG GACCCTGCCT GCTTGGAGCC
  CACCCGTTGC TGGCCGTGCA GAATGACAAG CTAGCTCCAG GAGACACTTG CCAGCCTTTC
  GCCTTTCCTA CATGGCTCCC TGCACCCTCC TAAGGTTTAG CATGTTCTGG TTTTGTTTTT
  CATTTTTTTA TTGCTGGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45592050	mCV22566167	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G
ss147554380	ENSMUSSNP5692266	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31969915					SNP	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135665207 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fuca1	fucosidase, alpha-L- 1, tissue			Intron
				Noncoding-Transcript-Variant
Rr602205	regulatory region 602205			1219 bp proximal
Rr602206	regulatory region 602206			1253 bp proximal