rs31966980 SNP Detail

Summary

• ID
  rs31966980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150116137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA GTGACCTCCA CGGGTGCCTG
  Y
  GGGGTGTTCT GGGTCTGCAC TCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45591450	mCV24999714	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148045679	ENSMUSSNP6401872	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321427692	CHEV_4_149405789	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31966980					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150116137 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15342	CpG island 15342	691 bp distal
Cpgi15343	CpG island 15343	1658 bp proximal
Gm70249	predicted gene, 70249	146 bp downstream
Rr605147	regulatory region 605147	1853 bp distal
Rr605148	regulatory region 605148	75 bp distal
Rr605149	regulatory region 605149	1364 bp proximal
Rr605150	regulatory region 605150	1760 bp proximal
Rr605151	regulatory region 605151	1803 bp proximal
Tssr40361	transcription start site region 40361	1830 bp downstream
Tssr40362	transcription start site region 40362	1878 bp upstream