rs31965407 SNP Detail

Summary

• ID
  rs31965407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100589251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA AAACAGGAGA GGTGACTCAG
  R
  TGTTCCAGGG AACTTCCTTT TGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss46089419	mCV24678688	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss322349746	CHEV_7_108088558	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31965407					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100589251 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19492	CpG island 19492			782 bp distal
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6			Intron
				Noncoding-Transcript-Variant
Tssr68182	transcription start site region 68182			1128 bp downstream
Tssr73796	transcription start site region 73796			1818 bp upstream
Tssr73797	transcription start site region 73797			1753 bp upstream
Tssr73798	transcription start site region 73798			1599 bp upstream
Tssr73799	transcription start site region 73799			1225 bp upstream
Tssr73800	transcription start site region 73800			1154 bp upstream
Tssr73801	transcription start site region 73801			1028 bp upstream
Tssr73802	transcription start site region 73802			995 bp upstream
Tssr73803	transcription start site region 73803			919 bp upstream
Tssr73804	transcription start site region 73804			900 bp upstream
Tssr73805	transcription start site region 73805			73 bp upstream