rs31965041 SNP Detail

Summary

• ID
  rs31965041
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148245779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAACCAG GCTAGGGGTG
  AGGAAGGCTG CTTTTGGCAG AAGCTCTGGG TCCTCAAGGA TTGCCCAGTC ATCTTTTCTG
  GCACCAAAGA CCCCACCCCT TCTGCCCTCC GGCTCCCTGC TGGGCCTGTA GGGGGCTGCT
  TGCTGAGTCA GACCTGCCTG CCTTGACTCT TATCCCTTCC TCACTAACTA TGCTCAGCTC
  R
  GAGTGTTCAC TCTTTAGGGG AGGAGGTGAG GGAACAGAGG TGGCCAGTCT TCCCTCCTAC
  TCCCAAGTCC TCACTCTCAG TCGGTGCCTG GCTTCAACAT CATCCACAGG GCCCCAGAAT
  AGGCTACCGT TTTCTTCCTG CTCCCAGGAA GTCCCTGGGC TCAGGGGCCC AATCCAGGTG
  AGTGAGTCAG CTTGGGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45591996	mCV24937570	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss147994699	ENSMUSSNP109555	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31965041					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148245779 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			278 bp distal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Fbxo44	F-box protein 44			1116 bp upstream
Rr398857	regulatory region 398857			993 bp downstream
Rr604608	regulatory region 604608			691 bp distal
Rr604609	regulatory region 604609			within coordinates
Tssr40263	transcription start site region 40263			1126 bp downstream
Tssr40264	transcription start site region 40264			692 bp downstream
Tssr40265	transcription start site region 40265			670 bp downstream
Tssr40266	transcription start site region 40266			642 bp downstream
Tssr44596	transcription start site region 44596			1720 bp upstream
Tssr44597	transcription start site region 44597			1503 bp upstream
Tssr44598	transcription start site region 44598			1485 bp upstream
Tssr44599	transcription start site region 44599			1392 bp upstream
Tssr44600	transcription start site region 44600			1250 bp upstream