rs31964712 SNP Detail

Summary

• ID
  rs31964712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151052424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACATACA CACACGATTT CTAGGAAGAG ATTCCTGCTA GGAAAAAAAT GATCAAGCTG
  TTTGGTTGGA GCTTGGAGTC CACTGCTCAC CCCTGCGTGG CCTGGGGAGC CCCGTCTAAT
  CTCCGCCCAA ACCCTCGCAC ACTGAAAAAC TCTGAACAAA AGAAGGGCCC CAAAGGCGGG
  Y
  GTGGTGGCGC ACGCCTTTAG TCCCAGCACT TGGGAGGCAG AGGCAGGTGA ATTTCTGAGT
  TCGAGGCCAA CCTGGTCTCC AGAGTGAGTT CCAGGACAGC CAGGGCTGCA CAGAGAAACC
  CTGTCTCGGA TACCCCCCCC CAAAAGGCCC CCAAATCTCA GTTCCGCATT TCCAGCAGCT
  GATGCAATCT GCCAGCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J
ss45591613	mCV24225879	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss148060849	ENSMUSSNP3046094	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J
rs31964712					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151052424 () rs orientation: forward

Symbol	Name	Function Class
Gm30120	predicted gene, 30120	within coordinates
Gm68496	predicted gene, 68496	405 bp upstream
Rr605476	regulatory region 605476	1292 bp distal
Rr605477	regulatory region 605477	972 bp distal
Rr605478	regulatory region 605478	1204 bp distal
Rr605479	regulatory region 605479	752 bp proximal
Rr605480	regulatory region 605480	1069 bp proximal