rs31963948 SNP Detail

Summary

• ID
  rs31963948
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:39693563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTCCTTA CTGGCTTATT
  CCTAGAAAAG AGAAGCAACT TTAGTATCCC TCTGTGGCAG GCAGGATAAA CATCGGTTAT
  GTGTAGTGAG CTAAGAGGTA GCAGTCTCTA CTTGGAGATA CTAAGACAGG CGCAGCCTCT
  ATTTGCAACT CCAAAGAGAA TTTGCTGTTT CAAGAGCACA TCTCCCAGTT GCTTGGGCAA
  S
  GAGACACTGA CTTGATTTGC AGTCGCTCCA TGAGATGCCA ACTCAGGATT TTCCTTGGTG
  CTTCATCACC AAGGAAAGGT CCTGTCACAT GTTCTGTTCA GTCACTTGGC ACATCGAAAT
  GATATGGGAA TGCAGTTTCC AGACTTCTAC CATCTTAATA GCTCTCAGGA AAAAATAAAT
  GTCAACATCT ACCAGAGTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39345967	mCV23769452	ABI	CRAMUS_MOUSE	f	SNP	G	G	C					C		C
ss63483376	NES16999776	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C		C	C	C	C	G	C	C	G	C
ss147674900	ENSMUSSNP2957430	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31963948					SNP	G	G	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63483376	NES16999776	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:39693563 () rs orientation: forward

Symbol	Name	Function Class
Dpys	dihydropyrimidinase	Intron
Rr501538	regulatory region 501538	889 bp distal
Rr501539	regulatory region 501539	within coordinates