rs31963011 SNP Detail

Summary

• ID
  rs31963011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171018586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCT CCTGATTCCA CCTCCTAGAC
  Y
  ACAGATGTGC GCGCACATCA CAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45090605	mCV24421015	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss119997566	PARCsnp_1.01052	PARC_SEQ	INBRED	f	SNP			C	T
ss146156100	ENSMUSSNP2801022	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320116994	CHEV_1_173121148	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31963011					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171018586 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	130 bp downstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423236	regulatory region 423236	1346 bp distal
Rr423237	regulatory region 423237	932 bp distal
Rr423238	regulatory region 423238	671 bp distal