rs31960095 SNP Detail

Summary

• ID
  rs31960095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152360908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGAAAAA AGTAAGCAGA
  CCAAAAGGAC TGTGTGGAGA GGCGGAGGCA CATAGATGCC TGGAAGTTTA GGGCCAGCCT
  GGTCTACATA GTGAGCTACG TAGTACAACC AAGGCTACAT AGGGTGGTGA CTTTGTCTCA
  AGACATTTTC GATTTTTAAA GAGAAGGAAT TGTAGACAAG ACTATCCGAG AATGTCTCTG
  Y
  TGGCCAGCTC AGCTTGGTTT TCCCAGTGTG AGAGAGAGCT GGGAATGTTG GCTGAGGCTG
  CTGCAGTTCC CCATCTGCCC CAGCTGGTGG CGCTGTGGGG TGGGGGGCTG GCAGCTAATG
  GGACTACAGG TGGCCTTCAC TTAGCCTGGG GCTCTGGAGT GCTGACAGAC TGGAAGACGG
  AATGGTAGGA GGGAATTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45590455	mCV23461042	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss148080243	ENSMUSSNP5700631	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss321434046	CHEV_4_151650560	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31960095					SNP	T	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152360908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15401	CpG island 15401	1334 bp distal
Gpr153	G protein-coupled receptor 153	Intron
Rr605818	regulatory region 605818	975 bp distal
Rr605819	regulatory region 605819	within coordinates
Rr605820	regulatory region 605820	76 bp proximal
Rr605821	regulatory region 605821	1441 bp proximal
Rr605822	regulatory region 605822	1644 bp proximal
Rr605823	regulatory region 605823	1824 bp proximal