rs31958529 SNP Detail

Summary

• ID
  rs31958529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137522030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATC CCTTTTTTGG GGGAACTACG
  Y
  CATCTTCATT CTACCATGTG ACACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45590341	mCV22547157	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss147620191	ENSMUSSNP4279522	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss321367517	CHEV_4_137350634	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31958529					SNP	T	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137522030 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Cpgi15139	CpG island 15139			813 bp proximal
Rr602723	regulatory region 602723			within coordinates
Rr602724	regulatory region 602724			678 bp proximal
Rr602725	regulatory region 602725			1589 bp proximal
Rr602726	regulatory region 602726			1655 bp proximal
Rr602727	regulatory region 602727			1724 bp proximal
Tssr1350	transcription start site region 1350			1566 bp downstream
Tssr44149	transcription start site region 44149			1589 bp downstream
Tssr44150	transcription start site region 44150			1631 bp downstream