rs31954450 SNP Detail

Summary

• ID
  rs31954450
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117229950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAATTAGAA CCCCCCCCCC CACAATGGTC CAGGTGGAAC
  ATATCAGTTC CATCCTTGTT GCACCTAGAG GAAATTACGG AGGCTCATAG AGACTAAATG
  R
  CCAAAAGGAG GCGGAATAGG ACACAGTGTC AGATCAAGCT ATGTGCCACC ACAGCCTGCT
  GCCTCAGAAG GTAATGCCCA GCAACTGATT CCCACTCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45590144	mCV22695439	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147288114	ENSMUSSNP1633301	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss321279258	CHEV_4_117045358	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31954450					SNP	A	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117229950 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377055	regulatory region 377055			515 bp upstream
Rr598132	regulatory region 598132			1855 bp distal
Rr598133	regulatory region 598133			558 bp distal
Rr598134	regulatory region 598134			25 bp proximal