rs31953833 SNP Detail

Summary

• ID
  rs31953833
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95682674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCAGCCAAT GGCCTAGGCA GAATTGTCTA GAATAGTTTG TCTACTTCCC AAGCCCCTGC
  TCACATTGCT CTGTCATGCT CACTGCCTTG AAGATAGCAA CTACTTTTAT CTTAACTGGT
  TCCTGGGAGA GACAGGCACA CTGGTAGCTC ATTATAGTGT TCAGCCGAGC AAGGCAAACC
  AAGAGGTAAA AAACCAAGAG CCTCCCTCTG TTCATAAACA TTTCTCCAGG CTCTTATTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  S
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTTTTAA
  GTAGTCATCA GGGAGTTGGC AGAAATAGAT GTATAAGTGT TTTTTCCCCC CTCTGGTAAG
  ACAATATCCT AGTCCATTTG GAAGAAGAGA TGACCATGGA AATACCCAGT CCCACACAGG
  TCTGCTGCCA CTCTCCAAAC ATCCGAACCT GGAAGCAGAC AGTCCAAGCA AAGCCTCCTG
  TTCCCTCCCA GGACTGTTGG CATCTGGAGC CTGCCTCCTG TCCTGCCAGG GGTTTAGGCC
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45590200	mCV23460823	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31953833					SNP	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95682674 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595472	regulatory region 595472			within coordinates