rs31953369 SNP Detail

Summary

• ID
  rs31953369
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12629360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGATGAATT CTTGTTTATT CCTAAATGGC TGTCACAAGA CCTATTCATC AAATGCTTAA
  AGGGAGAGAG GGGCTTACAG AAGCCAGTCT CAAGTTCAGC ACCGTTAAAT AATCATTAGG
  TTTCTGAGTT GGTCTTGAGA CCCACTGCAA ATGCACAAAG CTGGCGTCTT TTTCACTTTT
  TAAACTATTC ATCACAATTG CATTTAGATG AGATTCTGAC CTGATAAAGG GAAGGGGGGG
  TGCTTTTTGT CACTATCAGT TTCATGCTGT GTTCTTTCTC TTTTGAGGGT TTTTTTTTTT
  W
  AACAAAAGTA AAAGAAAATA AAGGCAGATG GCCAACTCTT TTCAATATCC GTTTGCTTTA
  TTTGAGCAGT TTAATGTAGT GAAACAGAGT GAAATGTTGC TACTTGCTAA ATGGTAAACA
  ACACCATTAC CCAGAATCCT GCTGTACATT GGTACAAAAT AGGGTGCTGG TGATTAATTA
  ATCTGTTGTT GTGATTGTAA TGCATGACAC ATAATAGATA GTGTGCCATG TATTTTAAAA
  GCAGCAAATT AGCAAATAAT AACTCTTCTG CATAAGACCG TCTCCATGGT GTACCCCTAA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45589653	mCV22947708	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs31953369					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12629360 () rs orientation: forward

Symbol	Name	Function Class
Gm37985	predicted gene, 37985	within coordinates
Rr589092	regulatory region 589092	1623 bp distal
Rr589093	regulatory region 589093	within coordinates