rs31949933 SNP Detail

Summary

• ID
  rs31949933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138592205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGA AGTTGCTCTG CCCGCAGCTG
  Y
  GCCTGCAGCG TTTGCAGACC GAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45589183	mCV23435504	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss321377648	CHEV_4_138420809	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31949933					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138592205 () rs orientation: forward

Symbol	Name	Function Class
Gm32930	predicted gene, 32930	within coordinates
Pla2g5	phospholipase A2, group V	1421 bp upstream
Rr398630	regulatory region 398630	1577 bp upstream
Rr603035	regulatory region 603035	1577 bp proximal
Rr603036	regulatory region 603036	1698 bp proximal
Tssr39889	transcription start site region 39889	1317 bp downstream
Tssr44191	transcription start site region 44191	1403 bp upstream
Tssr44192	transcription start site region 44192	1289 bp upstream