rs31949190 SNP Detail

Summary

• ID
  rs31949190
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59319485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAT GGGTGTGGCT GTACAGTTTC
  W
  TCCTCTGCGA ATGCCTAATA AAATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45589513	mCV23536041	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss146401369	ENSMUSSNP646403	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321140468	CHEV_4_59332357	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31949190					SNP	T	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59319485 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593038	regulatory region 593038			within coordinates
Rr593039	regulatory region 593039			1599 bp proximal
Susd1	sushi domain containing 1			Intron
				Noncoding-Transcript-Variant