rs31945587 SNP Detail

Summary

• ID
  rs31945587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129824109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCG GACTTGTTCT GTTTGGTTTG
  Y
  TGGGGACTGA ACCCAGGGCC TCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45588559	mCV24826239	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147454574	ENSMUSSNP3494208	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss321316119	CHEV_4_129607560	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31945587					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129824109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14911	CpG island 14911	1598 bp distal
Rr600387	regulatory region 600387	1399 bp distal
Rr600388	regulatory region 600388	1677 bp distal
Rr600389	regulatory region 600389	1702 bp proximal
Spocd1	SPOC domain containing 1	Intron
Tssr39208	transcription start site region 39208	1546 bp downstream
Tssr39209	transcription start site region 39209	1516 bp downstream