rs31939675 SNP Detail

Summary

• ID
  rs31939675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139342206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGT AACCTGAGGT GAGCGGTCCC
  Y
  CCTCATCACC TTTATTCGAC AATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45587883	mCV22729262	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147676011	ENSMUSSNP5599412	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321382817	CHEV_4_139170810	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31939675					SNP	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139342206 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15172	CpG island 15172	within coordinates
Cpgi15173	CpG island 15173	1439 bp proximal
Gm21969	predicted gene 21969	Intron
Iffo2	intermediate filament family orphan 2	Intron
Rr398637	regulatory region 398637	1783 bp upstream
Rr603260	regulatory region 603260	289 bp distal
Rr603261	regulatory region 603261	1183 bp proximal