rs31938528 SNP Detail

Summary

• ID
  rs31938528
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132650213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCCCGCTG AGGCTCCGCC CTCGCTCCGC CTCTCCGGGG
  GCTGCGGGAG CATTGGAGCT TCTCGCGATA CTCGATGAAG TTGTGATGTT TTGGGTTGCC
  R
  TGGAGCTTCC CGCTAGCCGA AGGAGTGTGG GATTGGGGTG ACAGTCGGGC AACGTCGGAT
  TCGAACTACG AGACCATCCG GAGTTTAAAC CCACTGGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45588053	mCV24820032	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss147479344	ENSMUSSNP4527116	ENSEMBL	ENSEMBL_Sanger	f	SNP			A	A
ss321337437	CHEV_4_132478817	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31938528					SNP	G	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132650213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	within coordinates
Fam76a	family with sequence similarity 76, member A	364 bp upstream
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	within coordinates
Rr601111	regulatory region 601111	420 bp distal
Rr601112	regulatory region 601112	within coordinates
Rr601113	regulatory region 601113	379 bp distal
Rr601114	regulatory region 601114	153 bp distal
Tssr43726	transcription start site region 43726	1755 bp upstream
Tssr43727	transcription start site region 43727	358 bp upstream
Tssr43728	transcription start site region 43728	339 bp upstream
Tssr43729	transcription start site region 43729	301 bp upstream
Tssr43730	transcription start site region 43730	289 bp upstream
Tssr43731	transcription start site region 43731	276 bp upstream
Tssr43732	transcription start site region 43732	271 bp upstream