rs31927569 SNP Detail

Summary

• ID
  rs31927569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53337818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGACCTTTG TGTGAGAAAA GGACCACCTG ACACTAGGTC
  ACAATCTCTG GGTCACATTA GTTTCCCTTC TTAAAGTGAC ATTCTCACAT CCCCTGCTGT
  Y
  CCCACTTCCA CGGCTCACAG AGAGCCTCTA TTCTTTCTTG GTGTTGAGGA AGAAATGGTG
  TAAGCAAACC CAGTCATCAA GAGCTGCTCA CACGTGGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45587305	mCV24422368	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss321117458	CHEV_4_53350690	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31927569					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53337818 () rs orientation: forward

Symbol	Name	Function Class
Rr376485	regulatory region 376485	620 bp upstream
Rr592236	regulatory region 592236	within coordinates
Rr592237	regulatory region 592237	1397 bp proximal
Rr592238	regulatory region 592238	1891 bp proximal
Tssr41768	transcription start site region 41768	1999 bp downstream