rs31926981 SNP Detail

Summary

• ID
  rs31926981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134999069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA AAACCCAAGT CGGGAATCTC
  Y
  GTATTTTCCG GAAGCCTTGG GGCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45587007	mCV25366244	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss321351515	CHEV_4_134827673	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31926981					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134999069 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Cpgi15068	CpG island 15068	139 bp proximal
Rr398589	regulatory region 398589	1132 bp upstream
Rr601974	regulatory region 601974	1404 bp distal
Rr601975	regulatory region 601975	within coordinates
Rr601976	regulatory region 601976	80 bp distal
Rr601977	regulatory region 601977	34 bp distal
Rr601978	regulatory region 601978	691 bp proximal
Rr601979	regulatory region 601979	1034 bp proximal
Rr601980	regulatory region 601980	1046 bp proximal
Rr601981	regulatory region 601981	1350 bp proximal
Tssr39607	transcription start site region 39607	415 bp upstream
Tssr43972	transcription start site region 43972	590 bp upstream
Tssr43973	transcription start site region 43973	948 bp downstream
Tssr43974	transcription start site region 43974	976 bp downstream
Tssr43975	transcription start site region 43975	996 bp downstream
Tssr43976	transcription start site region 43976	1023 bp downstream
Tssr43977	transcription start site region 43977	1040 bp downstream