rs31922380 SNP Detail

Summary

• ID
  rs31922380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108287825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCACCACG CCCTGCTGGA TGCAAACTTT TTTTTAATAA
  AGTTTTTATT AAACTTCATG AATATTCTAC AGTCTGTCCA CTTTGTTTAT AAGCACTCTG
  Y
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTAAGG TGGATGTGTG TAGAGGTCAG
  ATGTGTCAAC CTTGGATATT GTTCCTTTCG AAGCCATTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45586033	mCV22675523	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31922380					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108287825 () rs orientation: forward

Symbol	Name	Function Class
Gm40223	predicted gene, 40223	677 bp upstream
Rr597185	regulatory region 597185	257 bp proximal
Rr597186	regulatory region 597186	760 bp proximal
Tssr38291	transcription start site region 38291	747 bp upstream