rs31916738 SNP Detail

Summary

• ID
  rs31916738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117231501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCAGGCCC AAAGTGCCAA GGAAAGATTC CGGGGGGCAC
  AGATGGCCCA AGTCCTTCCT TGCCTCCACA GATATACACA GGGGACTCTA GTAAGTCAGA
  R
  ACAAGGTGGG GATGGGGAGC CCGGGGAGCC CCCGCCTCAG CAGCTCTTCC TCTGTTGAGA
  TGTCACAGTG AGTTATGGGT CACGTGGAGG TGTAGCCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45585535	mCV22695438	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147288121	ENSMUSSNP5365648	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321279263	CHEV_4_117046909	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs31916738					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117231501 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377055	regulatory region 377055			within coordinates
Rr598134	regulatory region 598134			within coordinates
Tssr42980	transcription start site region 42980			1149 bp downstream
Tssr42981	transcription start site region 42981			1167 bp downstream
Tssr42982	transcription start site region 42982			1191 bp downstream