rs31916269 SNP Detail

Summary

• ID
  rs31916269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53337830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGAAAAGG ACCACCTGAC ACTAGGTCAC AATCTCTGGG
  TCACATTAGT TTCCCTTCTT AAAGTGACAT TCTCACATCC CCTGCTGTCC CCACTTCCAC
  R
  GCTCACAGAG AGCCTCTATT CTTTCTTGGT GTTGAGGAAG AAATGGTGTA AGCAAACCCA
  GTCATCAAGA GCTGCTCACA CGTGGACAGC GAGCATGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45584384	mCV24422369	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss321117459	CHEV_4_53350702	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31916269					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53337830 () rs orientation: forward

Symbol	Name	Function Class
Rr376485	regulatory region 376485	608 bp upstream
Rr592236	regulatory region 592236	within coordinates
Rr592237	regulatory region 592237	1385 bp proximal
Rr592238	regulatory region 592238	1879 bp proximal
Tssr41768	transcription start site region 41768	1987 bp downstream