rs31912303 SNP Detail

Summary

• ID
  rs31912303
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135749840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAAAAAG GATTTCTATG
  TGTAGCCTTG GAGGTCCTGG AACTCACTCT GTAGACGAAG CTAGCCTTAA ACTCACAGAG
  ATCCACCTGC CTCTACGTCC TAAGGGCCAG GATTAAAGTT GTATGCCACC ACCACCTGGC
  TCCATTTAAA AATAAATTAA ATCATAATGA ATAAAAAGTC ATAATATATT AAAAACCAAA
  Y
  TGAACTACAT GAGATTCTGT CAGAAAAGAG CCGCTGGGCG TGGTGGTGCA CGCCTTTAAT
  CCCAGCACTC GGGAGGTAGA GGCAGGAGGA TTTCTGAGTT CAAGGCCAGC CTGGTCTACA
  AAGTGAATTC CAGGACAGCC AGGGCTATAC AGAGAAACCC TGTCTCGAAA AACCAAAAAA
  GAAAAAAAGA AAAGAAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45584834	mCV24785986	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31912303					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135749840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	415 bp distal
Eloa	elongin A	880 bp upstream
Gm68304	predicted gene, 68304	within coordinates
Rr398604	regulatory region 398604	557 bp downstream
Rr602239	regulatory region 602239	777 bp distal
Rr602240	regulatory region 602240	518 bp distal
Rr602241	regulatory region 602241	328 bp distal
Tssr44023	transcription start site region 44023	864 bp upstream
Tssr44024	transcription start site region 44024	835 bp upstream
Tssr44025	transcription start site region 44025	793 bp upstream