rs31909622 SNP Detail

Summary

• ID
  rs31909622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70320136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTTGTA GGCTATACAC
  AAAGCCTAAA ATCAGTCATG GCCACACAAC CTCTGCTGCC ACAGGAGAGC AGCCTCATAA
  AGTGAACCAT AAACACAGAG CCTATGTTCC AAGAAAACTT TTCTTACGAA AGCATGCAAT
  CTCCAACCCA ACTGCTCACA GGCCTTGCTG GGACCCAGTC TCGCCAGAGC TTCTTTAATT
  Y
  ATTAAATATT TACCATCCGC CTGCCCTGCA CAGAGCATAA GCCTGCCCTC TGGGAAACAA
  CAGTGAAGGA GACAGTGAGC CTGCACCAGG TTCCCAGGCA GGTGGGCAAA AGAGAGGAAA
  ACAAATGTCA GGATGCTGGT TGGTGTGTAT CAAGTGACGG AGCTCCCTGA CAAAGCTGCA
  CTGAAAGGCT GCATCCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45584704	mCV24157702	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31909622					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70320136 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdk5rap2	CDK5 regulatory subunit associated protein 2			Intron
				Noncoding-Transcript-Variant
Rr593870	regulatory region 593870			within coordinates
Rr593871	regulatory region 593871			403 bp proximal