rs31906764 SNP Detail

Summary

• ID
  rs31906764
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102709082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCACTTG CTGACATAGA
  AAGGTCAGCT GCATGTATAC CTGTGGTGCA TGTAGGAGAT ACGAAGGCTC AACCGGTCCT
  TGTTGGAGTA AGAATGGAGC CCAAACTGTG GTCCATTCAC AAGAATGAAA GAAGGGAGAC
  TTCTTCCACT CTTAAAAGAT GGGCAGTCAG ATGGGGGTGG GGTGGGCATA CAGGCTAACC
  W
  GACAGAATTC TAGGCTGGGA GGTGGGAGCT CACAGTCACC AGAGAATCTG AAATTTCAGA
  TGAGTGGCAC CACTAATGTA CGATTCACAC AAGAGCATCA CTAAGACTGG TATAGGTCCT
  ATCGGCATGC AGTACTGGGG CCTGACCTCC AAGGATGAAT AGCAATTCTG ATCACTGACA
  AAATAAGCAG TGAGTTTCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45584217	mCV22687277	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss147136007	ENSMUSSNP6501998	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A
ss321235119	CHEV_4_102524490	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31906764					SNP	A	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102709082 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69082	predicted gene, 69082			within coordinates
Rr596317	regulatory region 596317			1087 bp distal
Rr596318	regulatory region 596318			1308 bp proximal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1			Intron
				Noncoding-Transcript-Variant