rs31904102 SNP Detail

Summary

• ID
  rs31904102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149131723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAC TTCAATTTCC ACGAGGAACC
  R
  CAGCAATAAA CAGAAAAATA GAAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45584127	mCV22999546	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss148026188	ENSMUSSNP6710736	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G
ss321424464	CHEV_4_148421375	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31904102					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149131723 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pex14	peroxisomal biogenesis factor 14			Intron
				Noncoding-Transcript-Variant
Rr604817	regulatory region 604817			969 bp distal
Rr604818	regulatory region 604818			65 bp proximal
Rr604819	regulatory region 604819			332 bp proximal
Rr604820	regulatory region 604820			1529 bp proximal