rs31902325 SNP Detail

Summary

• ID
  rs31902325
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132785960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAG AGTTCCAGGT TACATTGAGA
  K
  ATCTTTTGGG GGTGCAGGCG TGTGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45583716	mCV22584518	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G	T
ss147480862	ENSMUSSNP4518709	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			T
ss321338418	CHEV_4_132614564	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31902325					SNP	T	T	T	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132785960 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Gm68631	predicted gene, 68631			1151 bp downstream
Rr377217	regulatory region 377217			223 bp downstream
Rr601173	regulatory region 601173			1630 bp distal
Rr601175	regulatory region 601175			1520 bp distal
Rr601176	regulatory region 601176			43 bp distal
Rr601177	regulatory region 601177			123 bp proximal