rs31902016 SNP Detail

Summary

• ID
  rs31902016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:56944943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTCGCCAG GTAAGCTCAA CCTGCAGGCA CCCAGCTCAG
  CTTAGTCCTC ATGCTCTAAT TCACTCATAA CGGTCTCTTA TAATGGGCTT GTTGTGCTTT
  R
  TAACTCCCTC CTCATCTCCC TTTCTCCCAT CACTGTGACC AAACTACTGT ATTAGGAGCC
  TTTTAGTAGT ATTTATTGAA AGGCTATGGT GTAGATCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45583469	mCV24911090	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss146382908	ENSMUSSNP4769522	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss321134019	CHEV_4_56957815	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31902016					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56944943 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14323	CpG island 14323			1361 bp proximal
Rr592624	regulatory region 592624			1270 bp distal
Rr592625	regulatory region 592625			43 bp distal
Tmem245	transmembrane protein 245			Intron
				Noncoding-Transcript-Variant