rs31901458 SNP Detail

Summary

• ID
  rs31901458
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134641583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC TTAAATAAAG AACGTGCAGT
  M
  AAATTACCAC GGTCAGCCGA AATTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45583366	mCV22753219	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss147538605	ENSMUSSNP895040	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		C
ss321349933	CHEV_4_134470187	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31901458					SNP	C	A	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134641583 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15052	CpG island 15052	287 bp proximal
Rr601858	regulatory region 601858	345 bp distal
Rr601859	regulatory region 601859	604 bp distal
Rr601860	regulatory region 601860	within coordinates
Rr601861	regulatory region 601861	733 bp proximal
Tmem50a	transmembrane protein 50A	Intron
Tssr39578	transcription start site region 39578	817 bp upstream
Tssr43943	transcription start site region 43943	668 bp downstream
Tssr43944	transcription start site region 43944	703 bp downstream
Tssr43945	transcription start site region 43945	738 bp downstream