rs31901454 SNP Detail

Summary

• ID
  rs31901454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117331790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCATTTGGA AGGTGGAGAC AAGATGACTG GGAATTCAGG
  GTCATCCTTG GCTACACAGA GAGTGTGAGG CCAGTCTGAG CTACATAGCC CACATCCACA
  Y
  TGCCATTTCC TAATCCTGTA AGGAGATGAA GAGCAAAGGT GTGTGTGTGA GTGTGAGTGT
  GAGTGTGAGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45583360	mCV24299291	ABI	CRAMUS_MOUSE	f	SNP	C		T	C
ss147289294	ENSMUSSNP4111661	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs31901454					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117331790 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr598150	regulatory region 598150			within coordinates
Rr598151	regulatory region 598151			1456 bp proximal
Tssr42983	transcription start site region 42983			562 bp upstream