rs31900687 SNP Detail

Summary

• ID
  rs31900687
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132613371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTACCAATC ATTTGAAGAA CTCAGGAGAA AGAGGCTGCT
  GAGTTGGAAG TTCTCTGTGG TAAAATTGAT GCTGTTGGTG CTGGTTAAGA GCACTGACTG
  Y
  TCTTCGATAC GTTCTGAGTT CAATTCCCAG CAACCACATG GTGGCTCACA ACCATCTATA
  ATGAGAGCTG ATGCTCTCTT CTGGTGTGTC TGAAGATAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45583519	mCV24822090	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs31900687					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132613371 () rs orientation: forward

Symbol	Name	Function Class
Gm13033	predicted gene 13033	within coordinates
Gm70413	predicted gene, 70413	within coordinates
Rr601102	regulatory region 601102	1519 bp distal
Rr601103	regulatory region 601103	747 bp distal
Rr601104	regulatory region 601104	1600 bp proximal
Rr601105	regulatory region 601105	1784 bp proximal
Rr601106	regulatory region 601106	1894 bp proximal
Stx12	syntaxin 12	1602 bp upstream
Tssr39426	transcription start site region 39426	1508 bp downstream
Tssr43723	transcription start site region 43723	1559 bp upstream
Tssr43724	transcription start site region 43724	1537 bp upstream
Tssr43725	transcription start site region 43725	1270 bp upstream