rs31900292 SNP Detail

Summary

• ID
  rs31900292
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150651852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCATCTGG ATGGAAAGGT
  AGGGTGGGCC TTGACATCAG GACTCAAAGA AGCATGGGCA CCGTCCTGCA GGGTTAAGCG
  TTACTTTTTT TTTTTTTTTT TTTGGTTTGG TTAGTTTTCT TTTTGTTTTT TTCAGAGATG
  GGGGTCTCTC TGTGTAGCCC TGGCTGCCCT GGAACTCACT CTGTAGACCA GGCTGGCCTC
  R
  AACTCAGAAA TCCGCCTGCC TCTGCCTCCC GAGTGCTGGG ATCAAAAGTG TGCGCCAGCA
  ACGCCCTGCA AGTGTTACTC TCAGAAGAGC TGGGAAAGAT AATGGGAGCT GATGGGGAAA
  GCCATAGGTT TGTGTTGTTT CGTGCTGTTC TCAAATCTGC TTTTAGCTGA GGCTGCCCTT
  GAGCTTCAGC TCCCACTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45583613	mCV23182734	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss148054975	ENSMUSSNP624376	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31900292					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150651852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15352	CpG island 15352	1659 bp proximal
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	913 bp downstream
Rr605335	regulatory region 605335	760 bp distal
Rr605336	regulatory region 605336	799 bp proximal
Rr605337	regulatory region 605337	1139 bp proximal
Tssr40415	transcription start site region 40415	901 bp downstream
Tssr40416	transcription start site region 40416	811 bp downstream
Tssr40417	transcription start site region 40417	1421 bp upstream
Tssr40418	transcription start site region 40418	1822 bp upstream
Tssr40419	transcription start site region 40419	1854 bp upstream
Tssr44743	transcription start site region 44743	519 bp upstream
Tssr44744	transcription start site region 44744	1305 bp downstream